The Science and Applications of Microbial Genomics: Workshop Summary (2013)
Chapter: Appendix B--Agenda
The Science and Applications of Microbial Genomics
June 12–13, 2012
500 Fifth Street, NW
Washington DC
DAY ONE: TUESDAY, JUNE 12, 2012
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8:45–9:15: |
Registration and Continental Breakfast |
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9:15–9:30: |
Welcoming Remarks: David Relman, James Hughes, and Lonnie King |
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9:30–10:00: |
KEYNOTE: Yersinia pestis Population Genetics Across Time and Space Paul Keim, Northern Arizona University |
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10:00–10:20: |
Discussion |
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10:20–10:30: |
BREAK |
SESSION I: Microbial Genomics—Diversity, Evolution, and Adaptation
Arturo Casadevall, Moderator
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10:30–11:00: |
The Earth Microbiome Project: Modeling the Earth’s Microbiome Jack A. Gilbert, Argonne National Laboratory/University of Chicago |
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11:00–11:30: |
Variation in Microbial Communities and Genomes George Weinstock, Washington University in St. Louis |
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11:30–12:00: |
Population Diversity in Deep-Sea Microbial Communities Peter Girguis, Harvard University |
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12:00–12:30: |
The Application of Computational/Theoretical and Experimental Approaches to Study the Evolution of Microorganisms Eric Alm, Massachusetts Institute of Technology |
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12:30–1:00: |
Discussion |
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1:00–1:45: |
LUNCH |
SESSION II: Microbial Genomics—Molecular Mechanisms
of Disease Emergence and Epidemiology
David Relman, Moderator
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1:45–2:15: |
Characterizing Intra-host Influenza Virus Populations to Predict Emergence Elodie Ghedin, University of Pittsburgh School of Medicine |
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2:15–2:45: |
Identifying Signatures of Recent Selection and Transmission in Pathogenic Bacteria Julian Parkhill, The Sanger Institute |
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2:45–3:15: |
Comparative Genomics of E. coli and Shigella: Identification and Characterization of Pathogenic Variants Based on Whole Genome Sequence Analysis David Rasko, University of Maryland Institute for Genome Sciences |
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3:15–3:45: |
BREAK |
DAY TWO: WEDNESDAY, JUNE 13, 2012
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8:30–9:00: |
Registration and Continental Breakfast |
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9:00–9:15: |
Welcoming Remarks and Summary of Day One: David Relman |
SESSION III: Application of Genomics and High-Throughput
Technologies for Microbial Surveillance and Outbreak Traceback
Claire Fraser, Moderator
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9:15–9:45: |
Virulence as an Emergent Property Arturo Casadevall, Albert Einstein College of Medicine |
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9:45–10:15: |
Understanding the Origins, Evolution, and Transmission Dynamics of Outbreak Agents Through Genomic Epidemiology Jennifer Gardy, British Columbia Centre for Disease Control/University of British Columbia |
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10:15–10:45: |
Use of Genomic Platforms to Detect and Discover Emerging/Evolving Viral Diseases David Wang, Washington University in St. Louis |
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10:45–11:00: |
BREAK |
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11:00–11:30: |
Genomic Epidemiology of Gram-Negative Pathogens: From Acinetobacter to E. coli Mark Pallen, University of Birmingham |
SESSION IV: Microbial Forensic Tools, Technologies, and
Platforms: Problems of Concordance and Discordance
Paul Keim, Moderator
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1:15–1:45: |
Microbial Forensics Bruce Budowle, University of North Texas Health Science Center |
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1:45–2:15: |
Discussion of the Technical Approaches Used in the Amerithrax Investigation Claire Fraser, University of Maryland Institute for Genome Sciences |
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2:15–2:45: |
Analyzing Metagenomic Data: Inferring Microbial Community Function with MG-RAST Folker Meyer, Argonne National Laboratory |
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2:45–3:00: |
BREAK |
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3:00–5:00: |
Panel Discussion: The Problem of Concordance and Discordance in Data Generated Using Different Platforms and Technologies |
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5:00–5:15: |
Concluding Remarks |
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5:15: |
ADJOURN |
